test_parquet_data_node.py 18 KB

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  1. # Copyright 2021-2024 Avaiga Private Limited
  2. #
  3. # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
  4. # the License. You may obtain a copy of the License at
  5. #
  6. # http://www.apache.org/licenses/LICENSE-2.0
  7. #
  8. # Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on
  9. # an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the
  10. # specific language governing permissions and limitations under the License.
  11. import os
  12. import pathlib
  13. import re
  14. import uuid
  15. from datetime import datetime, timedelta
  16. from importlib import util
  17. from time import sleep
  18. import freezegun
  19. import numpy as np
  20. import pandas as pd
  21. import pytest
  22. from pandas.testing import assert_frame_equal
  23. from taipy.common.config import Config
  24. from taipy.common.config.common.scope import Scope
  25. from taipy.common.config.exceptions.exceptions import InvalidConfigurationId
  26. from taipy.core.common._utils import _normalize_path
  27. from taipy.core.data._data_manager import _DataManager
  28. from taipy.core.data._data_manager_factory import _DataManagerFactory
  29. from taipy.core.data.data_node_id import DataNodeId
  30. from taipy.core.data.parquet import ParquetDataNode
  31. from taipy.core.exceptions.exceptions import (
  32. InvalidExposedType,
  33. UnknownCompressionAlgorithm,
  34. UnknownParquetEngine,
  35. )
  36. from taipy.core.reason import NoFileToDownload, NotAFile
  37. @pytest.fixture(scope="function", autouse=True)
  38. def cleanup():
  39. yield
  40. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/temp.parquet")
  41. if os.path.isfile(path):
  42. os.remove(path)
  43. class MyCustomObject:
  44. def __init__(self, id, integer, text):
  45. self.id = id
  46. self.integer = integer
  47. self.text = text
  48. class MyOtherCustomObject:
  49. def __init__(self, id, sentence):
  50. self.id = id
  51. self.sentence = sentence
  52. def create_custom_class(**kwargs):
  53. return MyOtherCustomObject(id=kwargs["id"], sentence=kwargs["text"])
  54. @pytest.mark.skip(reason="Parquet not available in this version")
  55. class TestParquetDataNode:
  56. __engine = ["pyarrow"]
  57. if util.find_spec("fastparquet"):
  58. __engine.append("fastparquet")
  59. def test_create(self):
  60. path = "data/node/path"
  61. compression = "snappy"
  62. parquet_dn_config = Config.configure_parquet_data_node(
  63. id="foo_bar", default_path=path, compression=compression, name="super name"
  64. )
  65. dn = _DataManagerFactory._build_manager()._create_and_set(parquet_dn_config, None, None)
  66. assert isinstance(dn, ParquetDataNode)
  67. assert dn.storage_type() == "parquet"
  68. assert dn.config_id == "foo_bar"
  69. assert dn.name == "super name"
  70. assert dn.scope == Scope.SCENARIO
  71. assert dn.id is not None
  72. assert dn.owner_id is None
  73. assert dn.last_edit_date is None
  74. assert dn.job_ids == []
  75. assert not dn.is_ready_for_reading
  76. assert dn.path == path
  77. assert dn.properties["exposed_type"] == "pandas"
  78. assert dn.properties["compression"] == "snappy"
  79. assert dn.properties["engine"] == "pyarrow"
  80. parquet_dn_config_1 = Config.configure_parquet_data_node(
  81. id="bar", default_path=path, compression=compression, exposed_type=MyCustomObject
  82. )
  83. dn_1 = _DataManagerFactory._build_manager()._create_and_set(parquet_dn_config_1, None, None)
  84. assert isinstance(dn_1, ParquetDataNode)
  85. assert dn_1.properties["exposed_type"] == MyCustomObject
  86. with pytest.raises(InvalidConfigurationId):
  87. dn = ParquetDataNode("foo bar", Scope.SCENARIO, properties={"path": path, "name": "super name"})
  88. def test_get_user_properties(self, parquet_file_path):
  89. dn_1 = ParquetDataNode("dn_1", Scope.SCENARIO, properties={"path": parquet_file_path})
  90. assert dn_1._get_user_properties() == {}
  91. dn_2 = ParquetDataNode(
  92. "dn_2",
  93. Scope.SCENARIO,
  94. properties={
  95. "exposed_type": "numpy",
  96. "default_data": "foo",
  97. "default_path": parquet_file_path,
  98. "engine": "pyarrow",
  99. "compression": "snappy",
  100. "read_kwargs": {"columns": ["a", "b"]},
  101. "write_kwargs": {"index": False},
  102. "foo": "bar",
  103. },
  104. )
  105. # exposed_type, default_data, default_path, path, engine, compression, read_kwargs, write_kwargs
  106. # are filtered out
  107. assert dn_2._get_user_properties() == {"foo": "bar"}
  108. def test_new_parquet_data_node_with_existing_file_is_ready_for_reading(self, parquet_file_path):
  109. not_ready_dn_cfg = Config.configure_data_node(
  110. "not_ready_data_node_config_id", "parquet", path="NOT_EXISTING.parquet"
  111. )
  112. not_ready_dn = _DataManager._bulk_get_or_create([not_ready_dn_cfg])[not_ready_dn_cfg]
  113. assert not not_ready_dn.is_ready_for_reading
  114. ready_dn_cfg = Config.configure_data_node("ready_data_node_config_id", "parquet", path=parquet_file_path)
  115. ready_dn = _DataManager._bulk_get_or_create([ready_dn_cfg])[ready_dn_cfg]
  116. assert ready_dn.is_ready_for_reading
  117. @pytest.mark.parametrize(
  118. ["properties", "exists"],
  119. [
  120. ({}, False),
  121. ({"default_data": {"a": ["foo", "bar"]}}, True),
  122. ],
  123. )
  124. def test_create_with_default_data(self, properties, exists):
  125. dn = ParquetDataNode("foo", Scope.SCENARIO, DataNodeId(f"dn_id_{uuid.uuid4()}"), properties=properties)
  126. assert dn.path == f"{Config.core.storage_folder}parquets/{dn.id}.parquet"
  127. assert os.path.exists(dn.path) is exists
  128. @pytest.mark.parametrize("engine", __engine)
  129. def test_modin_deprecated_in_favor_of_pandas(self, engine, parquet_file_path):
  130. # Create ParquetDataNode with modin exposed_type
  131. props = {"path": parquet_file_path, "exposed_type": "modin", "engine": engine}
  132. parquet_data_node_as_modin = ParquetDataNode("bar", Scope.SCENARIO, properties=props)
  133. assert parquet_data_node_as_modin.properties["exposed_type"] == "pandas"
  134. data_modin = parquet_data_node_as_modin.read()
  135. assert isinstance(data_modin, pd.DataFrame)
  136. def test_set_path(self):
  137. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": "foo.parquet"})
  138. assert dn.path == "foo.parquet"
  139. dn.path = "bar.parquet"
  140. assert dn.path == "bar.parquet"
  141. def test_raise_error_unknown_parquet_engine(self):
  142. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  143. with pytest.raises(UnknownParquetEngine):
  144. ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "engine": "foo"})
  145. def test_raise_error_unknown_compression_algorithm(self):
  146. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  147. with pytest.raises(UnknownCompressionAlgorithm):
  148. ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "compression": "foo"})
  149. def test_raise_error_invalid_exposed_type(self):
  150. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  151. with pytest.raises(InvalidExposedType):
  152. ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "exposed_type": "foo"})
  153. def test_get_system_file_modified_date_instead_of_last_edit_date(self, tmpdir_factory):
  154. temp_file_path = str(tmpdir_factory.mktemp("data").join("temp.parquet"))
  155. pd.DataFrame([]).to_parquet(temp_file_path)
  156. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": temp_file_path, "exposed_type": "pandas"})
  157. dn.write(pd.DataFrame(data={"col1": [1, 2], "col2": [3, 4]}))
  158. previous_edit_date = dn.last_edit_date
  159. sleep(0.1)
  160. pd.DataFrame(pd.DataFrame(data={"col1": [5, 6], "col2": [7, 8]})).to_parquet(temp_file_path)
  161. new_edit_date = datetime.fromtimestamp(os.path.getmtime(temp_file_path))
  162. assert previous_edit_date < dn.last_edit_date
  163. assert new_edit_date == dn.last_edit_date
  164. sleep(0.1)
  165. dn.write(pd.DataFrame(data={"col1": [9, 10], "col2": [10, 12]}))
  166. assert new_edit_date < dn.last_edit_date
  167. os.unlink(temp_file_path)
  168. def test_get_system_folder_modified_date_instead_of_last_edit_date(self, tmpdir_factory):
  169. temp_folder_path = tmpdir_factory.mktemp("data").strpath
  170. temp_file_path = os.path.join(temp_folder_path, "temp.parquet")
  171. pd.DataFrame([]).to_parquet(temp_file_path)
  172. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": temp_folder_path})
  173. initial_edit_date = dn.last_edit_date
  174. # Sleep so that the file can be created successfully on Ubuntu
  175. sleep(0.1)
  176. pd.DataFrame(pd.DataFrame(data={"col1": [1, 2], "col2": [3, 4]})).to_parquet(temp_file_path)
  177. first_edit_date = datetime.fromtimestamp(os.path.getmtime(temp_file_path))
  178. assert dn.last_edit_date > initial_edit_date
  179. assert dn.last_edit_date == first_edit_date
  180. sleep(0.1)
  181. pd.DataFrame(pd.DataFrame(data={"col1": [5, 6], "col2": [7, 8]})).to_parquet(temp_file_path)
  182. second_edit_date = datetime.fromtimestamp(os.path.getmtime(temp_file_path))
  183. assert dn.last_edit_date > first_edit_date
  184. assert dn.last_edit_date == second_edit_date
  185. os.unlink(temp_file_path)
  186. def test_migrate_to_new_path(self, tmp_path):
  187. _base_path = os.path.join(tmp_path, ".data")
  188. path = os.path.join(_base_path, "test.parquet")
  189. # create a file on old path
  190. os.mkdir(_base_path)
  191. with open(path, "w"):
  192. pass
  193. dn = ParquetDataNode("foo_bar", Scope.SCENARIO, properties={"path": path, "name": "super name"})
  194. assert ".data" not in dn.path
  195. assert os.path.exists(dn.path)
  196. def test_is_downloadable(self):
  197. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  198. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "exposed_type": "pandas"})
  199. reasons = dn.is_downloadable()
  200. assert reasons
  201. assert reasons.reasons == ""
  202. def test_is_not_downloadable_no_file(self):
  203. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/wrong_path.parquet")
  204. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "exposed_type": "pandas"})
  205. reasons = dn.is_downloadable()
  206. assert not reasons
  207. assert len(reasons._reasons) == 1
  208. assert str(NoFileToDownload(_normalize_path(path), dn.id)) in reasons.reasons
  209. def test_is_not_downloadable_not_a_file(self):
  210. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample")
  211. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "exposed_type": "pandas"})
  212. reasons = dn.is_downloadable()
  213. assert not reasons
  214. assert len(reasons._reasons) == 1
  215. assert str(NotAFile(_normalize_path(path), dn.id)) in reasons.reasons
  216. def test_get_downloadable_path(self):
  217. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  218. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "exposed_type": "pandas"})
  219. assert re.split(r"[\\/]", dn._get_downloadable_path()) == re.split(r"[\\/]", path)
  220. def test_get_downloadable_path_with_not_existing_file(self):
  221. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": "NOT_EXISTING.parquet"})
  222. assert dn._get_downloadable_path() == ""
  223. def test_get_downloadable_path_as_directory_should_return_nothing(self):
  224. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/parquet_example")
  225. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path})
  226. assert dn._get_downloadable_path() == ""
  227. def test_upload(self, parquet_file_path, tmpdir_factory):
  228. old_parquet_path = tmpdir_factory.mktemp("data").join("df.parquet").strpath
  229. old_data = pd.DataFrame([{"a": 0, "b": 1, "c": 2}, {"a": 3, "b": 4, "c": 5}])
  230. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": old_parquet_path, "exposed_type": "pandas"})
  231. dn.write(old_data)
  232. old_last_edit_date = dn.last_edit_date
  233. upload_content = pd.read_parquet(parquet_file_path)
  234. with freezegun.freeze_time(old_last_edit_date + timedelta(seconds=1)):
  235. dn._upload(parquet_file_path)
  236. assert_frame_equal(dn.read(), upload_content) # The content of the dn should change to the uploaded content
  237. assert dn.last_edit_date > old_last_edit_date
  238. assert dn.path == _normalize_path(old_parquet_path) # The path of the dn should not change
  239. def test_upload_with_upload_check_pandas(self, parquet_file_path, tmpdir_factory):
  240. old_parquet_path = tmpdir_factory.mktemp("data").join("df.parquet").strpath
  241. old_data = pd.DataFrame([{"a": 0, "b": 1, "c": 2}, {"a": 3, "b": 4, "c": 5}])
  242. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": old_parquet_path, "exposed_type": "pandas"})
  243. dn.write(old_data)
  244. old_last_edit_date = dn.last_edit_date
  245. def check_data_column(upload_path, upload_data):
  246. return upload_path.endswith(".parquet") and upload_data.columns.tolist() == ["a", "b", "c"]
  247. not_exists_parquet_path = tmpdir_factory.mktemp("data").join("not_exists.parquet").strpath
  248. reasons = dn._upload(not_exists_parquet_path, upload_checker=check_data_column)
  249. assert bool(reasons) is False
  250. assert (
  251. str(list(reasons._reasons[dn.id])[0]) == "The uploaded file not_exists.parquet can not be read,"
  252. f' therefore is not a valid data file for data node "{dn.id}"'
  253. )
  254. not_parquet_path = tmpdir_factory.mktemp("data").join("wrong_format_df.not_parquet").strpath
  255. old_data.to_parquet(not_parquet_path, index=False)
  256. # The upload should fail when the file is not a parquet
  257. reasons = dn._upload(not_parquet_path, upload_checker=check_data_column)
  258. assert bool(reasons) is False
  259. assert (
  260. str(list(reasons._reasons[dn.id])[0])
  261. == f'The uploaded file wrong_format_df.not_parquet has invalid data for data node "{dn.id}"'
  262. )
  263. wrong_format_parquet_path = tmpdir_factory.mktemp("data").join("wrong_format_df.parquet").strpath
  264. pd.DataFrame([{"a": 1, "b": 2, "d": 3}, {"a": 4, "b": 5, "d": 6}]).to_parquet(
  265. wrong_format_parquet_path, index=False
  266. )
  267. # The upload should fail when check_data_column() return False
  268. reasons = dn._upload(wrong_format_parquet_path, upload_checker=check_data_column)
  269. assert bool(reasons) is False
  270. assert (
  271. str(list(reasons._reasons[dn.id])[0])
  272. == f'The uploaded file wrong_format_df.parquet has invalid data for data node "{dn.id}"'
  273. )
  274. assert_frame_equal(dn.read(), old_data) # The content of the dn should not change when upload fails
  275. assert dn.last_edit_date == old_last_edit_date # The last edit date should not change when upload fails
  276. assert dn.path == _normalize_path(old_parquet_path) # The path of the dn should not change
  277. # The upload should succeed when check_data_column() return True
  278. assert dn._upload(parquet_file_path, upload_checker=check_data_column)
  279. def test_upload_with_upload_check_numpy(self, tmpdir_factory):
  280. old_parquet_path = tmpdir_factory.mktemp("data").join("df.parquet").strpath
  281. old_data = np.array([[1, 2, 3], [4, 5, 6]])
  282. new_parquet_path = tmpdir_factory.mktemp("data").join("new_upload_data.parquet").strpath
  283. new_data = np.array([[1, 2, 3], [4, 5, 6]])
  284. pd.DataFrame(new_data, columns=["a", "b", "c"]).to_parquet(new_parquet_path, index=False)
  285. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": old_parquet_path, "exposed_type": "numpy"})
  286. dn.write(old_data)
  287. old_last_edit_date = dn.last_edit_date
  288. def check_data_is_positive(upload_path, upload_data):
  289. return upload_path.endswith(".parquet") and np.all(upload_data > 0)
  290. not_exists_parquet_path = tmpdir_factory.mktemp("data").join("not_exists.parquet").strpath
  291. reasons = dn._upload(not_exists_parquet_path, upload_checker=check_data_is_positive)
  292. assert bool(reasons) is False
  293. assert (
  294. str(list(reasons._reasons[dn.id])[0]) == "The uploaded file not_exists.parquet can not be read,"
  295. f' therefore is not a valid data file for data node "{dn.id}"'
  296. )
  297. not_parquet_path = tmpdir_factory.mktemp("data").join("wrong_format_df.not_parquet").strpath
  298. pd.DataFrame(old_data, columns=["a", "b", "c"]).to_parquet(not_parquet_path, index=False)
  299. # The upload should fail when the file is not a parquet
  300. reasons = dn._upload(not_parquet_path, upload_checker=check_data_is_positive)
  301. assert (
  302. str(list(reasons._reasons[dn.id])[0])
  303. == f'The uploaded file wrong_format_df.not_parquet has invalid data for data node "{dn.id}"'
  304. )
  305. wrong_format_parquet_path = tmpdir_factory.mktemp("data").join("wrong_format_df.parquet").strpath
  306. pd.DataFrame(np.array([[-1, 2, 3], [-4, -5, -6]]), columns=["a", "b", "c"]).to_parquet(
  307. wrong_format_parquet_path, index=False
  308. )
  309. # The upload should fail when check_data_is_positive() return False
  310. reasons = dn._upload(wrong_format_parquet_path, upload_checker=check_data_is_positive)
  311. assert (
  312. str(list(reasons._reasons[dn.id])[0])
  313. == f'The uploaded file wrong_format_df.parquet has invalid data for data node "{dn.id}"'
  314. )
  315. np.array_equal(dn.read(), old_data) # The content of the dn should not change when upload fails
  316. assert dn.last_edit_date == old_last_edit_date # The last edit date should not change when upload fails
  317. assert dn.path == _normalize_path(old_parquet_path) # The path of the dn should not change
  318. # The upload should succeed when check_data_is_positive() return True
  319. assert dn._upload(new_parquet_path, upload_checker=check_data_is_positive)