test_parquet_data_node.py 17 KB

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  1. # Copyright 2021-2024 Avaiga Private Limited
  2. #
  3. # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
  4. # the License. You may obtain a copy of the License at
  5. #
  6. # http://www.apache.org/licenses/LICENSE-2.0
  7. #
  8. # Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on
  9. # an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the
  10. # specific language governing permissions and limitations under the License.
  11. import os
  12. import pathlib
  13. import uuid
  14. from datetime import datetime, timedelta
  15. from importlib import util
  16. from time import sleep
  17. import freezegun
  18. import numpy as np
  19. import pandas as pd
  20. import pytest
  21. from pandas.testing import assert_frame_equal
  22. from taipy.config.common.scope import Scope
  23. from taipy.config.config import Config
  24. from taipy.config.exceptions.exceptions import InvalidConfigurationId
  25. from taipy.core.data._data_manager import _DataManager
  26. from taipy.core.data._data_manager_factory import _DataManagerFactory
  27. from taipy.core.data.data_node_id import DataNodeId
  28. from taipy.core.data.parquet import ParquetDataNode
  29. from taipy.core.exceptions.exceptions import (
  30. InvalidExposedType,
  31. UnknownCompressionAlgorithm,
  32. UnknownParquetEngine,
  33. )
  34. @pytest.fixture(scope="function", autouse=True)
  35. def cleanup():
  36. yield
  37. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/temp.parquet")
  38. if os.path.isfile(path):
  39. os.remove(path)
  40. class MyCustomObject:
  41. def __init__(self, id, integer, text):
  42. self.id = id
  43. self.integer = integer
  44. self.text = text
  45. class MyOtherCustomObject:
  46. def __init__(self, id, sentence):
  47. self.id = id
  48. self.sentence = sentence
  49. def create_custom_class(**kwargs):
  50. return MyOtherCustomObject(id=kwargs["id"], sentence=kwargs["text"])
  51. class TestParquetDataNode:
  52. __engine = ["pyarrow"]
  53. if util.find_spec("fastparquet"):
  54. __engine.append("fastparquet")
  55. def test_create(self):
  56. path = "data/node/path"
  57. compression = "snappy"
  58. parquet_dn_config = Config.configure_parquet_data_node(
  59. id="foo_bar", default_path=path, compression=compression, name="super name"
  60. )
  61. dn = _DataManagerFactory._build_manager()._create_and_set(parquet_dn_config, None, None)
  62. assert isinstance(dn, ParquetDataNode)
  63. assert dn.storage_type() == "parquet"
  64. assert dn.config_id == "foo_bar"
  65. assert dn.name == "super name"
  66. assert dn.scope == Scope.SCENARIO
  67. assert dn.id is not None
  68. assert dn.owner_id is None
  69. assert dn.last_edit_date is None
  70. assert dn.job_ids == []
  71. assert not dn.is_ready_for_reading
  72. assert dn.path == path
  73. assert dn.properties["exposed_type"] == "pandas"
  74. assert dn.properties["compression"] == "snappy"
  75. assert dn.properties["engine"] == "pyarrow"
  76. parquet_dn_config_1 = Config.configure_parquet_data_node(
  77. id="bar", default_path=path, compression=compression, exposed_type=MyCustomObject
  78. )
  79. dn_1 = _DataManagerFactory._build_manager()._create_and_set(parquet_dn_config_1, None, None)
  80. assert isinstance(dn_1, ParquetDataNode)
  81. assert dn_1.properties["exposed_type"] == MyCustomObject
  82. with pytest.raises(InvalidConfigurationId):
  83. dn = ParquetDataNode("foo bar", Scope.SCENARIO, properties={"path": path, "name": "super name"})
  84. def test_get_user_properties(self, parquet_file_path):
  85. dn_1 = ParquetDataNode("dn_1", Scope.SCENARIO, properties={"path": parquet_file_path})
  86. assert dn_1._get_user_properties() == {}
  87. dn_2 = ParquetDataNode(
  88. "dn_2",
  89. Scope.SCENARIO,
  90. properties={
  91. "exposed_type": "numpy",
  92. "default_data": "foo",
  93. "default_path": parquet_file_path,
  94. "engine": "pyarrow",
  95. "compression": "snappy",
  96. "read_kwargs": {"columns": ["a", "b"]},
  97. "write_kwargs": {"index": False},
  98. "foo": "bar",
  99. },
  100. )
  101. # exposed_type, default_data, default_path, path, engine, compression, read_kwargs, write_kwargs
  102. # are filtered out
  103. assert dn_2._get_user_properties() == {"foo": "bar"}
  104. def test_new_parquet_data_node_with_existing_file_is_ready_for_reading(self, parquet_file_path):
  105. not_ready_dn_cfg = Config.configure_data_node(
  106. "not_ready_data_node_config_id", "parquet", path="NOT_EXISTING.parquet"
  107. )
  108. not_ready_dn = _DataManager._bulk_get_or_create([not_ready_dn_cfg])[not_ready_dn_cfg]
  109. assert not not_ready_dn.is_ready_for_reading
  110. ready_dn_cfg = Config.configure_data_node("ready_data_node_config_id", "parquet", path=parquet_file_path)
  111. ready_dn = _DataManager._bulk_get_or_create([ready_dn_cfg])[ready_dn_cfg]
  112. assert ready_dn.is_ready_for_reading
  113. @pytest.mark.parametrize(
  114. ["properties", "exists"],
  115. [
  116. ({}, False),
  117. ({"default_data": {"a": ["foo", "bar"]}}, True),
  118. ],
  119. )
  120. def test_create_with_default_data(self, properties, exists):
  121. dn = ParquetDataNode("foo", Scope.SCENARIO, DataNodeId(f"dn_id_{uuid.uuid4()}"), properties=properties)
  122. assert dn.path == os.path.join(Config.core.storage_folder.strip("/"), "parquets", dn.id + ".parquet")
  123. assert os.path.exists(dn.path) is exists
  124. @pytest.mark.parametrize("engine", __engine)
  125. def test_modin_deprecated_in_favor_of_pandas(self, engine, parquet_file_path):
  126. # Create ParquetDataNode with modin exposed_type
  127. props = {"path": parquet_file_path, "exposed_type": "modin", "engine": engine}
  128. parquet_data_node_as_modin = ParquetDataNode("bar", Scope.SCENARIO, properties=props)
  129. assert parquet_data_node_as_modin.properties["exposed_type"] == "pandas"
  130. data_modin = parquet_data_node_as_modin.read()
  131. assert isinstance(data_modin, pd.DataFrame)
  132. def test_set_path(self):
  133. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": "foo.parquet"})
  134. assert dn.path == "foo.parquet"
  135. dn.path = "bar.parquet"
  136. assert dn.path == "bar.parquet"
  137. def test_raise_error_unknown_parquet_engine(self):
  138. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  139. with pytest.raises(UnknownParquetEngine):
  140. ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "engine": "foo"})
  141. def test_raise_error_unknown_compression_algorithm(self):
  142. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  143. with pytest.raises(UnknownCompressionAlgorithm):
  144. ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "compression": "foo"})
  145. def test_raise_error_invalid_exposed_type(self):
  146. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  147. with pytest.raises(InvalidExposedType):
  148. ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "exposed_type": "foo"})
  149. def test_get_system_file_modified_date_instead_of_last_edit_date(self, tmpdir_factory):
  150. temp_file_path = str(tmpdir_factory.mktemp("data").join("temp.parquet"))
  151. pd.DataFrame([]).to_parquet(temp_file_path)
  152. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": temp_file_path, "exposed_type": "pandas"})
  153. dn.write(pd.DataFrame(data={"col1": [1, 2], "col2": [3, 4]}))
  154. previous_edit_date = dn.last_edit_date
  155. sleep(0.1)
  156. pd.DataFrame(pd.DataFrame(data={"col1": [5, 6], "col2": [7, 8]})).to_parquet(temp_file_path)
  157. new_edit_date = datetime.fromtimestamp(os.path.getmtime(temp_file_path))
  158. assert previous_edit_date < dn.last_edit_date
  159. assert new_edit_date == dn.last_edit_date
  160. sleep(0.1)
  161. dn.write(pd.DataFrame(data={"col1": [9, 10], "col2": [10, 12]}))
  162. assert new_edit_date < dn.last_edit_date
  163. os.unlink(temp_file_path)
  164. def test_get_system_folder_modified_date_instead_of_last_edit_date(self, tmpdir_factory):
  165. temp_folder_path = tmpdir_factory.mktemp("data").strpath
  166. temp_file_path = os.path.join(temp_folder_path, "temp.parquet")
  167. pd.DataFrame([]).to_parquet(temp_file_path)
  168. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": temp_folder_path})
  169. initial_edit_date = dn.last_edit_date
  170. # Sleep so that the file can be created successfully on Ubuntu
  171. sleep(0.1)
  172. pd.DataFrame(pd.DataFrame(data={"col1": [1, 2], "col2": [3, 4]})).to_parquet(temp_file_path)
  173. first_edit_date = datetime.fromtimestamp(os.path.getmtime(temp_file_path))
  174. assert dn.last_edit_date > initial_edit_date
  175. assert dn.last_edit_date == first_edit_date
  176. sleep(0.1)
  177. pd.DataFrame(pd.DataFrame(data={"col1": [5, 6], "col2": [7, 8]})).to_parquet(temp_file_path)
  178. second_edit_date = datetime.fromtimestamp(os.path.getmtime(temp_file_path))
  179. assert dn.last_edit_date > first_edit_date
  180. assert dn.last_edit_date == second_edit_date
  181. os.unlink(temp_file_path)
  182. def test_migrate_to_new_path(self, tmp_path):
  183. _base_path = os.path.join(tmp_path, ".data")
  184. path = os.path.join(_base_path, "test.parquet")
  185. # create a file on old path
  186. os.mkdir(_base_path)
  187. with open(path, "w"):
  188. pass
  189. dn = ParquetDataNode("foo_bar", Scope.SCENARIO, properties={"path": path, "name": "super name"})
  190. assert ".data" not in dn.path
  191. assert os.path.exists(dn.path)
  192. def test_get_downloadable_path(self):
  193. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/example.parquet")
  194. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path, "exposed_type": "pandas"})
  195. assert dn._get_downloadable_path() == path
  196. def test_get_downloadable_path_with_not_existing_file(self):
  197. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": "NOT_EXISTING.parquet"})
  198. assert dn._get_downloadable_path() == ""
  199. def test_get_downloadable_path_as_directory_should_return_nothing(self):
  200. path = os.path.join(pathlib.Path(__file__).parent.resolve(), "data_sample/parquet_example")
  201. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": path})
  202. assert dn._get_downloadable_path() == ""
  203. def test_upload(self, parquet_file_path, tmpdir_factory):
  204. old_parquet_path = tmpdir_factory.mktemp("data").join("df.parquet").strpath
  205. old_data = pd.DataFrame([{"a": 0, "b": 1, "c": 2}, {"a": 3, "b": 4, "c": 5}])
  206. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": old_parquet_path, "exposed_type": "pandas"})
  207. dn.write(old_data)
  208. old_last_edit_date = dn.last_edit_date
  209. upload_content = pd.read_parquet(parquet_file_path)
  210. with freezegun.freeze_time(old_last_edit_date + timedelta(seconds=1)):
  211. dn._upload(parquet_file_path)
  212. assert_frame_equal(dn.read(), upload_content) # The content of the dn should change to the uploaded content
  213. assert dn.last_edit_date > old_last_edit_date
  214. assert dn.path == old_parquet_path # The path of the dn should not change
  215. def test_upload_with_upload_check_pandas(self, parquet_file_path, tmpdir_factory):
  216. old_parquet_path = tmpdir_factory.mktemp("data").join("df.parquet").strpath
  217. old_data = pd.DataFrame([{"a": 0, "b": 1, "c": 2}, {"a": 3, "b": 4, "c": 5}])
  218. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": old_parquet_path, "exposed_type": "pandas"})
  219. dn.write(old_data)
  220. old_last_edit_date = dn.last_edit_date
  221. def check_data_column(upload_path, upload_data):
  222. return upload_path.endswith(".parquet") and upload_data.columns.tolist() == ["a", "b", "c"]
  223. not_exists_parquet_path = tmpdir_factory.mktemp("data").join("not_exists.parquet").strpath
  224. reasons = dn._upload(not_exists_parquet_path, upload_checker=check_data_column)
  225. assert bool(reasons) is False
  226. assert (
  227. str(list(reasons._reasons[dn.id])[0]) == "The uploaded file not_exists.parquet can not be read,"
  228. f' therefore is not a valid data file for data node "{dn.id}"'
  229. )
  230. not_parquet_path = tmpdir_factory.mktemp("data").join("wrong_format_df.not_parquet").strpath
  231. old_data.to_parquet(not_parquet_path, index=False)
  232. # The upload should fail when the file is not a parquet
  233. reasons = dn._upload(not_parquet_path, upload_checker=check_data_column)
  234. assert bool(reasons) is False
  235. assert (
  236. str(list(reasons._reasons[dn.id])[0])
  237. == f'The uploaded file wrong_format_df.not_parquet has invalid data for data node "{dn.id}"'
  238. )
  239. wrong_format_parquet_path = tmpdir_factory.mktemp("data").join("wrong_format_df.parquet").strpath
  240. pd.DataFrame([{"a": 1, "b": 2, "d": 3}, {"a": 4, "b": 5, "d": 6}]).to_parquet(
  241. wrong_format_parquet_path, index=False
  242. )
  243. # The upload should fail when check_data_column() return False
  244. reasons = dn._upload(wrong_format_parquet_path, upload_checker=check_data_column)
  245. assert bool(reasons) is False
  246. assert (
  247. str(list(reasons._reasons[dn.id])[0])
  248. == f'The uploaded file wrong_format_df.parquet has invalid data for data node "{dn.id}"'
  249. )
  250. assert_frame_equal(dn.read(), old_data) # The content of the dn should not change when upload fails
  251. assert dn.last_edit_date == old_last_edit_date # The last edit date should not change when upload fails
  252. assert dn.path == old_parquet_path # The path of the dn should not change
  253. # The upload should succeed when check_data_column() return True
  254. assert dn._upload(parquet_file_path, upload_checker=check_data_column)
  255. def test_upload_with_upload_check_numpy(self, tmpdir_factory):
  256. old_parquet_path = tmpdir_factory.mktemp("data").join("df.parquet").strpath
  257. old_data = np.array([[1, 2, 3], [4, 5, 6]])
  258. new_parquet_path = tmpdir_factory.mktemp("data").join("new_upload_data.parquet").strpath
  259. new_data = np.array([[1, 2, 3], [4, 5, 6]])
  260. pd.DataFrame(new_data, columns=["a", "b", "c"]).to_parquet(new_parquet_path, index=False)
  261. dn = ParquetDataNode("foo", Scope.SCENARIO, properties={"path": old_parquet_path, "exposed_type": "numpy"})
  262. dn.write(old_data)
  263. old_last_edit_date = dn.last_edit_date
  264. def check_data_is_positive(upload_path, upload_data):
  265. return upload_path.endswith(".parquet") and np.all(upload_data > 0)
  266. not_exists_parquet_path = tmpdir_factory.mktemp("data").join("not_exists.parquet").strpath
  267. reasons = dn._upload(not_exists_parquet_path, upload_checker=check_data_is_positive)
  268. assert bool(reasons) is False
  269. assert (
  270. str(list(reasons._reasons[dn.id])[0]) == "The uploaded file not_exists.parquet can not be read,"
  271. f' therefore is not a valid data file for data node "{dn.id}"'
  272. )
  273. not_parquet_path = tmpdir_factory.mktemp("data").join("wrong_format_df.not_parquet").strpath
  274. pd.DataFrame(old_data, columns=["a", "b", "c"]).to_parquet(not_parquet_path, index=False)
  275. # The upload should fail when the file is not a parquet
  276. reasons = dn._upload(not_parquet_path, upload_checker=check_data_is_positive)
  277. assert (
  278. str(list(reasons._reasons[dn.id])[0])
  279. == f'The uploaded file wrong_format_df.not_parquet has invalid data for data node "{dn.id}"'
  280. )
  281. wrong_format_parquet_path = tmpdir_factory.mktemp("data").join("wrong_format_df.parquet").strpath
  282. pd.DataFrame(np.array([[-1, 2, 3], [-4, -5, -6]]), columns=["a", "b", "c"]).to_parquet(
  283. wrong_format_parquet_path, index=False
  284. )
  285. # The upload should fail when check_data_is_positive() return False
  286. reasons = dn._upload(wrong_format_parquet_path, upload_checker=check_data_is_positive)
  287. assert (
  288. str(list(reasons._reasons[dn.id])[0])
  289. == f'The uploaded file wrong_format_df.parquet has invalid data for data node "{dn.id}"'
  290. )
  291. np.array_equal(dn.read(), old_data) # The content of the dn should not change when upload fails
  292. assert dn.last_edit_date == old_last_edit_date # The last edit date should not change when upload fails
  293. assert dn.path == old_parquet_path # The path of the dn should not change
  294. # The upload should succeed when check_data_is_positive() return True
  295. assert dn._upload(new_parquet_path, upload_checker=check_data_is_positive)